Could you also send me the binary?

http://yadi.sk/d/P8wCizig9rsys Its compiled from sources taken from here: ftp://bird.network.cz/pub/bird/bird-1.3.11.tar.gz core file generated from it. But the same segfaults is for Debian 7u1 repository ( version 1.3.7) and .deb from bird.network.cz.

Well, there is no simple way to do it. You can use 'stubnet' option with hidden and/or summary attribute to eliminate these, like:

stubnet 10.16.a.254/32 { hidden; };

or

stubnet 10.16.a.128/25 { summary; hidden; };

The problem that the amount of /32 prefixes is too large (about 250 /32 addresses - one for each VLAN), and wrote stubnet option for each /32 is madness (.